- A comprehensive public repository for genome mapping data from farmed and other animal species.
The Biological General Repository for Interaction Datasets: An online interaction repository with data compiled through comprehensive curation efforts.
Basic Local Alignment Search Tool: A sequence similarity search program (NCBI).
- Ciona intestinalis
- DOE Joint Genome Institute Ciona intestinalis genome project.
- Mirror database repositories for nucleotide sequences.
- A resource for annotated eukaryotic genomes.
- A global information system on fishes.
- The database of the Drosophila Genome.
- Fugu Genome Project
- Provides access to the whole-genome sequence of the Fugu.
- Fugu Informatics Network
- Access to resources geared towards understanding sequence data generated by the human genome project by studying the Fugu ribripes genome.
- Gene Index Project
- Uses the available EST and gene sequences, along with the reference genomes wherever available, to provide an inventory of likely genes and their variants and to annotate these with information regarding the functional roles played by these genes and their products.
NCBI GenPept: A database of automated translations of GenBank® nucleotide sequences.
Gene Ontology Consortium: Provides a controlled vocabulary of terms for describing gene product characteristics and gene product annotation data from GO Consortium members, as well as tools to access and process this data.
GO Annotation@EBI: A project run by EBI that assigns GO terms to gene products.
Genomic Research on Atlantic Salmon Project: A project that aims to coordinate all aspects of genomics research on Atlantic salmon.
- A resource of curated and calculated orthologs for genes as represented by UniGene or by annotation of genomic sequences.
Homologous Vertebrate Genes Database: A database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees.
- A database of protein families, domains, and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.
Kyoto Encyclopedia of Genes and Genomes: A collection of manually drawn pathway maps representing knowledge of the molecular interaction and reaction networks. These data are integrated with chemicals, genes and diseases in CTD to provide insights into molecular networks that may be affected by chemicals, and possible mechanisms underlying environmental diseases.
- Medakafish Homepage
Mouse Genome Informatics: A resource that provides integrated access to data on the genetics, genomics, and biology of the laboratory mouse.
National Center for Biotechnology Information: A division of the National Library of Medicine (NLM) and is a component of the National Institutes of Health (NIH). CTD incorporates information from NCBI resources including the Entrez Gene database, PubChem, and OMIM.
- NCBI Gene
- A database of genes from RefSeq genomes, defined by sequence and/or located in the NCBI Map Viewer.
- NCBI Taxonomy
- The taxonomy of organisms represented in NCBI sequence databases.
- NLM® Toxicogenomics
- A compendium of Internet resources related to toxicogenomics.
Online Mendelian Inheritance in Man®: A catalog of human genes and genetic disorders. OMIM data and disease terms are integrated into CTD to provide disease information associated with chemicals and genes.
Protein Data Bank: A repository for processing and distribution of 3-D biological macromolecular structure data.
Protein Families Database of Alignments and HMMs: A large collection of multiple sequence alignments and hidden Markov models covering common protein domains and families.
- Curates information that establishes knowledge about the relationships among drugs, diseases, and genes, including their variations and gene products.
Protein Fingerprints: A compendium of protein fingerprints or groups of conserved motifs used to characterize a protein family.
Protein Domain Families: A comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases.
- A database of protein families and domains consisting of biologically significant sites, patterns and profiles that help to reliably identify to which known protein family a new sequence belongs.
NCBI Reference Sequences: NCBI Reference Sequences
Rat Genome Database: A resource that curates and integrates rat genetic and genomic data and provides access to this data to support research using the rat as a genetic model for the study of human disease.
Simple Modular Architecture Research Tool: A resource that allows the identification and annotation of genetically mobile domains and the analysis of domain architectures.
- An experimental system that automatically partitions GenBank® sequences into non-redundant sets of gene-oriented clusters.
- A comprehensive catalog of information on proteins. It is a central repository of protein sequence and function created by joining the information contained in UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and PIR.
- A database of duplicated genes in fish.
- A collaborative knowledge resource for the life sciences.
- The biology and genome of C. elegans.
- A resource dedicated to the Poeciliid fish genus Xiphophorus.
The Zebrafish Information Network: The zebrafish model organism database.